R packages by svilsen

STRMPS - Analysis of Short Tandem Repeat (STR) Massively Parallel Sequencing (MPS) Data

Loading, identifying, aggregating, manipulating, and analysing short tandem repeat regions of massively parallel sequencing data in forensic genetics. The analyses and framework implemented in this package relies on the papers of Vilsen et al. (2017) <doi:10.1016/j.fsigen.2017.01.017> and Vilsen et al. (2018) <doi:10.1016/j.fsigen.2018.04.003>. Note: that the parallelisation in the package relies on mclapply() and, thus, speed-ups will only be seen on UNIX based systems.

Last updated 6 days ago

biostringspwalignshortreadiranges

4.18 score 232 downloads

RWNN - Random Weight Neural Networks

Creation, estimation, and prediction of random weight neural networks (RWNN), Schmidt et al. (1992) <doi:10.1109/ICPR.1992.201708>, including popular variants like extreme learning machines, Huang et al. (2006) <doi:10.1016/j.neucom.2005.12.126>, sparse RWNN, Zhang et al. (2019) <doi:10.1016/j.neunet.2019.01.007>, and deep RWNN, Henríquez et al. (2018) <doi:10.1109/IJCNN.2018.8489703>. It further allows for the creation of ensemble RWNNs like bagging RWNN, Sui et al. (2021) <doi:10.1109/ECCE47101.2021.9595113>, boosting RWNN, stacking RWNN, and ensemble deep RWNN, Shi et al. (2021) <doi:10.1016/j.patcog.2021.107978>.

Last updated 20 days ago

openblascppopenmp

3.40 score 122 downloads